A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15864525



Internal ID19936465
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr21:44999951..45000960hg38UCSC Ensembl
chr21:46419866..46420875hg19UCSC Ensembl
Cytoband21q22.3
Allele length
AssemblyAllele length
hg381010
hg191010
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4285551
Supporting Variants
Samples
Known GenesLINC00162
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15864525
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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