A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15862509



Internal ID19587763
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr20:59995939..60524331hg38UCSC Ensembl
chr20:58570994..59099389hg19UCSC Ensembl
Cytoband20q13.33
Allele length
AssemblyAllele length
hg38528393
hg19528396
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4283753
Supporting Variants
Samples
Known GenesC20orf197, CDH26, LOC284757, MIR4533
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15862509
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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