A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15859239



Internal ID19931179
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr20:14518421..14625243hg38UCSC Ensembl
chr20:14499067..14605889hg19UCSC Ensembl
Cytoband20p12.1
Allele length
AssemblyAllele length
hg38106823
hg19106823
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4272536
Supporting Variants
Samples
Known GenesMACROD2, MACROD2-IT1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15859239
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000138


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