A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15858256



Internal ID19930196
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr20:38449024..38453061hg38UCSC Ensembl
chr20:37077667..37081704hg19UCSC Ensembl
Cytoband20q11.23
Allele length
AssemblyAllele length
hg384038
hg194038
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4280364
Supporting Variants
Samples
Known GenesSNHG11, SNORA60
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15858256
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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