A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15856323



Internal ID19928263
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:165269553..165271294hg38UCSC Ensembl
chr1:165238790..165240531hg19UCSC Ensembl
Cytoband1q23.3
Allele length
AssemblyAllele length
hg381742
hg191742
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4055483
Supporting Variants
Samples
Known GenesLMX1A
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15856323
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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