A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15855294



Internal ID19580548
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:150569823..150570819hg38UCSC Ensembl
chr1:150542299..150543295hg19UCSC Ensembl
Cytoband1q21.3
Allele length
AssemblyAllele length
hg38997
hg19997
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4067071
Supporting Variants
Samples
Known GenesADAMTSL4-AS1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15855294
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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