A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15854953



Internal ID19926893
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:155828571..155835972hg38UCSC Ensembl
chr1:155798362..155805763hg19UCSC Ensembl
Cytoband1q22
Allele length
AssemblyAllele length
hg387402
hg197402
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4070323
Supporting Variants
Samples
Known GenesGON4L
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15854953
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000092


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