A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15853637



Internal ID19925577
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:116593863..116599284hg38UCSC Ensembl
chr1:117136485..117141906hg19UCSC Ensembl
Cytoband1p13.1
Allele length
AssemblyAllele length
hg385422
hg195422
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4058418
Supporting Variants
Samples
Known GenesIGSF3
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15853637
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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