A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15853572



Internal ID19925512
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:86998943..87002949hg38UCSC Ensembl
chr1:87464626..87468632hg19UCSC Ensembl
Cytoband1p22.3
Allele length
AssemblyAllele length
hg384007
hg194007
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4068245
Supporting Variants
Samples
Known GenesHS2ST1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15853572
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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