A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15852827



Internal ID19578083
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:56499914..56501069hg38UCSC Ensembl
chr1:56965586..56966741hg19UCSC Ensembl
Cytoband1p32.2
Allele length
AssemblyAllele length
hg381156
hg191156
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4040791
Supporting Variants
Samples
Known GenesPPAP2B
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15852827
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000092


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer