A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15850997



Internal ID19922980
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:68193865..68201436hg38UCSC Ensembl
chr1:68659548..68667119hg19UCSC Ensembl
Cytoband1p31.3
Allele length
AssemblyAllele length
hg387572
hg197572
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4052349
Supporting Variants
Samples
Known GenesGNG12-AS1, WLS
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15850997
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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