A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15850672



Internal ID19922660
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:248592373..248595182hg38UCSC Ensembl
chr1:248755674..248758483hg19UCSC Ensembl
Cytoband1q44
Allele length
AssemblyAllele length
hg382810
hg192810
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4059817
Supporting Variants
Samples
Known GenesOR2T10
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15850672
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.002213


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