A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15848925



Internal ID19574269
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:26037054..26043672hg38UCSC Ensembl
chr1:26363545..26370163hg19UCSC Ensembl
Cytoband1p36.11
Allele length
AssemblyAllele length
hg386619
hg196619
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4048317
Supporting Variants
Samples
Known GenesSLC30A2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15848925
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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