A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15848573



Internal ID19573920
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:223114120..223115760hg38UCSC Ensembl
chr1:223287462..223289102hg19UCSC Ensembl
Cytoband1q41
Allele length
AssemblyAllele length
hg381641
hg191641
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4066853
Supporting Variants
Samples
Known GenesTLR5
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15848573
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer