A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15846689



Internal ID19572070
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:220053658..220071708hg38UCSC Ensembl
chr1:220227000..220245050hg19UCSC Ensembl
Cytoband1q41
Allele length
AssemblyAllele length
hg3818051
hg1918051
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4064897
Supporting Variants
Samples
Known GenesBPNT1, RNU5F-1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15846689
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000094


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