A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15842800



Internal ID19914886
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr19:27569620..27936865hg38UCSC Ensembl
chr19:28060528..28427773hg19UCSC Ensembl
Cytoband19q11
Allele length
AssemblyAllele length
hg38367246
hg19367246
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4258990
Supporting Variants
Samples
Known GenesLINC00662
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15842800
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000092


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