A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15841937



Internal ID19567337
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr19:3760124..3810546hg38UCSC Ensembl
chr19:3760122..3810544hg19UCSC Ensembl
Cytoband19p13.3
Allele length
AssemblyAllele length
hg3850423
hg1950423
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4264293
Supporting Variants
Samples
Known GenesAPBA3, MATK, MRPL54, RAX2, ZFR2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15841937
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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