A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15836622



Internal ID19908708
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr17:58598120..58634911hg38UCSC Ensembl
chr17:56675481..56712272hg19UCSC Ensembl
Cytoband17q22
Allele length
AssemblyAllele length
hg3836792
hg1936792
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4258474
Supporting Variants
Samples
Known GenesTEX14
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15836622
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000048


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer