A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15836618



Internal ID19562018
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr17:58450328..58453551hg38UCSC Ensembl
chr17:56527689..56530912hg19UCSC Ensembl
Cytoband17q22
Allele length
AssemblyAllele length
hg383224
hg193224
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4252629
Supporting Variants
Samples
Known GenesHSF5
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15836618
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000092


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