A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15836320



Internal ID19908406
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr17:45046256..45057953hg38UCSC Ensembl
chr17:43123624..43135321hg19UCSC Ensembl
Cytoband17q21.31
Allele length
AssemblyAllele length
hg3811698
hg1911698
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4253708
Supporting Variants
Samples
Known GenesDCAKD
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15836320
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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