A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15836041



Internal ID19908127
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr17:52873915..53237271hg38UCSC Ensembl
chr17:50951275..51314632hg19UCSC Ensembl
Cytoband17q22
Allele length
AssemblyAllele length
hg38363357
hg19363358
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4267927
Supporting Variants
Samples
Known GenesC17orf112
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15836041
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000138


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer