A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15835616



Internal ID19907702
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr17:20492070..20643048hg38UCSC Ensembl
chr17:20395383..20546361hg19UCSC Ensembl
Cytoband17p11.2
Allele length
AssemblyAllele length
hg38150979
hg19150979
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4235158
Supporting Variants
Samples
Known GenesCDRT15L2, KRT16P3
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15835616
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000277


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