A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15834293



Internal ID19906379
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr17:17404996..17445798hg38UCSC Ensembl
chr17:17308310..17349112hg19UCSC Ensembl
Cytoband17p11.2
Allele length
AssemblyAllele length
hg3840803
hg1940803
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4232953
Supporting Variants
Samples
Known GenesSMCR9
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15834293
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000138


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