A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15833701



Internal ID19905787
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr17:20245686..20412687hg38UCSC Ensembl
chr17:20148999..20316000hg19UCSC Ensembl
Cytoband17p11.2
Allele length
AssemblyAllele length
hg38167002
hg19167002
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4532511
Supporting Variants
Samples
Known GenesCCDC144CP, SPECC1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15833701
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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