A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15828919



Internal ID19901005
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr15:101814797..101933797hg38UCSC Ensembl
chr15:102355000..102474000hg19UCSC Ensembl
Cytoband15q26.3
Allele length
AssemblyAllele length
hg38119001
hg19119001
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4248680
Supporting Variants
Samples
Known GenesOR4F13P, OR4F15, OR4F4
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15828919
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000197


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer