A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15828841



Internal ID19900927
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr15:98764894..98785454hg38UCSC Ensembl
chr15:99308123..99328683hg19UCSC Ensembl
Cytoband15q26.3
Allele length
AssemblyAllele length
hg3820561
hg1920561
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4243426
Supporting Variants
Samples
Known GenesIGF1R, MIR4714
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15828841
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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