A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15827741



Internal ID19899827
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr16:5029742..5063915hg38UCSC Ensembl
chr16:5079743..5113916hg19UCSC Ensembl
Cytoband16p13.3
Allele length
AssemblyAllele length
hg3834174
hg1934174
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4236284
Supporting Variants
Samples
Known GenesC16orf89, NAGPA, NAGPA-AS1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15827741
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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