A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15826502



Internal ID19898588
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr16:10651939..10672536hg38UCSC Ensembl
chr16:10745796..10766393hg19UCSC Ensembl
Cytoband16p13.13
Allele length
AssemblyAllele length
hg3820598
hg1920598
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4246466
Supporting Variants
Samples
Known GenesTEKT5
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15826502
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000093


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