A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15825781



Internal ID19551181
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr15:89654923..89665090hg38UCSC Ensembl
chr15:90198154..90208321hg19UCSC Ensembl
Cytoband15q26.1
Allele length
AssemblyAllele length
hg3810168
hg1910168
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4246359
Supporting Variants
Samples
Known GenesKIF7, PLIN1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15825781
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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