A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15823071



Internal ID19548471
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr14:54853176..54859495hg38UCSC Ensembl
chr14:55319894..55326213hg19UCSC Ensembl
Cytoband14q22.2
Allele length
AssemblyAllele length
hg386320
hg196320
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4231420
Supporting Variants
Samples
Known GenesGCH1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15823071
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.00023


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