A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15822030



Internal ID19894116
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr15:31063001..31099444hg38UCSC Ensembl
chr15:31355204..31391647hg19UCSC Ensembl
Cytoband15q13.3
Allele length
AssemblyAllele length
hg3836444
hg1936444
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4238383
Supporting Variants
Samples
Known GenesMIR211, TRPM1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15822030
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000369


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