A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15820789



Internal ID19546189
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr14:41587509..41616904hg38UCSC Ensembl
chr14:42056712..42086107hg19UCSC Ensembl
Cytoband14q21.1
Allele length
AssemblyAllele length
hg3829396
hg1929396
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4214498
Supporting Variants
Samples
Known GenesLRFN5
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15820789
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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