A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15811440



Internal ID19883526
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr12:124212137..124221009hg38UCSC Ensembl
chr12:124696683..124705555hg19UCSC Ensembl
Cytoband12q24.31
Allele length
AssemblyAllele length
hg388873
hg198873
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4227038
Supporting Variants
Samples
Known GenesZNF664-FAM101A
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15811440
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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