A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15808982



Internal ID19534382
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr12:14634393..14646746hg38UCSC Ensembl
chr12:14787327..14799680hg19UCSC Ensembl
Cytoband12p13.1
Allele length
AssemblyAllele length
hg3812354
hg1912354
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4197667
Supporting Variants
Samples
Known GenesGUCY2C
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15808982
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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