A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15807853



Internal ID19879939
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr12:29295067..29323567hg38UCSC Ensembl
chr12:29448000..29476500hg19UCSC Ensembl
Cytoband12p11.22
Allele length
AssemblyAllele length
hg3828501
hg1928501
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4199886
Supporting Variants
Samples
Known GenesFAR2, LOC100506606
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15807853
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000047


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