A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15805589



Internal ID19530989
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr12:2822991..3101774hg38UCSC Ensembl
chr12:2932157..3210940hg19UCSC Ensembl
Cytoband12p13.33
Allele length
AssemblyAllele length
hg38278784
hg19278784
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4207367
Supporting Variants
Samples
Known GenesFOXM1, ITFG2, LOC100507424, NRIP2, RHNO1, TEAD4, TSPAN9, TULP3
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15805589
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000047


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