A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15803568



Internal ID19875654
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr11:106814298..106864050hg38UCSC Ensembl
chr11:106685024..106734776hg19UCSC Ensembl
Cytoband11q22.3
Allele length
AssemblyAllele length
hg3849753
hg1949753
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4206153
Supporting Variants
Samples
Known GenesGUCY1A2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15803568
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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