A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15801992



Internal ID19527392
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr11:66244407..66252715hg38UCSC Ensembl
chr11:66011878..66020186hg19UCSC Ensembl
Cytoband11q13.2
Allele length
AssemblyAllele length
hg388309
hg198309
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4193981
Supporting Variants
Samples
Known GenesPACS1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15801992
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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