A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15797334



Internal ID19522734
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr10:98265323..98265696hg38UCSC Ensembl
chr10:100025080..100025453hg19UCSC Ensembl
Cytoband10q24.2
Allele length
AssemblyAllele length
hg38374
hg19374
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4172557
Supporting Variants
Samples
Known GenesLOXL4
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15797334
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.256363


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