A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15793917



Internal ID19866000
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr10:46107772..46120822hg38UCSC Ensembl
chr10:51475000..51488050hg19UCSC Ensembl
Cytoband10q11.23
Allele length
AssemblyAllele length
hg3813051
hg1913051
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4186119
Supporting Variants
Samples
Known GenesAGAP7
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15793917
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.013554


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