A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15791744



Internal ID19863825
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:50645066..50653696hg38UCSC Ensembl
chrX:50388066..50396696hg19UCSC Ensembl
CytobandXp11.22
Allele length
AssemblyAllele length
hg388631
hg198631
Variant TypeOTHER sequence alteration
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4323965
Supporting Variants
Samples
Known GenesSHROOM4
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Commentscomplex variant
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15791744
Frequency
Sample Size10847
Observed Gain0
Observed Loss0
Observed Complex0
Frequency0.000046


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