A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15790533



Internal ID19862594
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr5:74697063..74706254hg38UCSC Ensembl
chr5:73992888..74002079hg19UCSC Ensembl
Cytoband5q13.3
Allele length
AssemblyAllele length
hg389192
hg199192
Variant TypeOTHER sequence alteration
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4557680
Supporting Variants
Samples
Known GenesHEXB
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Commentscomplex variant
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15790533
Frequency
Sample Size10847
Observed Gain0
Observed Loss0
Observed Complex0
Frequency0.000046


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