A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15790139



Internal ID19862194
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr4:16613840..16622671hg38UCSC Ensembl
chr4:16615463..16624294hg19UCSC Ensembl
Cytoband4p15.32
Allele length
AssemblyAllele length
hg388832
hg198832
Variant TypeOTHER sequence alteration
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4557957
Supporting Variants
Samples
Known GenesLDB2, MIR548AX
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Commentscomplex variant
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15790139
Frequency
Sample Size10847
Observed Gain0
Observed Loss0
Observed Complex0
Frequency0.000046


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