A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15789953



Internal ID19515321
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:165184982..165187514hg38UCSC Ensembl
chr3:164902770..164905302hg19UCSC Ensembl
Cytoband3q26.1
Allele length
AssemblyAllele length
hg382533
hg192533
Variant TypeOTHER sequence alteration
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4566895
Supporting Variants
Samples
Known GenesSLITRK3
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Commentscomplex variant
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15789953
Frequency
Sample Size10847
Observed Gain0
Observed Loss0
Observed Complex0
Frequency0.000046


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