A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15789627



Internal ID19861679
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:133461212..133625720hg38UCSC Ensembl
chr2:134218783..134383291hg19UCSC Ensembl
Cytoband2q21.2
Allele length
AssemblyAllele length
hg38164509
hg19164509
Variant TypeOTHER sequence alteration
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4344292
Supporting Variants
Samples
Known GenesNCKAP5
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Commentscomplex variant
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15789627
Frequency
Sample Size10847
Observed Gain0
Observed Loss0
Observed Complex0
Frequency0.000738


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