A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15789626



Internal ID19861678
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:133386468..133715623hg38UCSC Ensembl
chr2:134144040..134473194hg19UCSC Ensembl
Cytoband2q21.2
Allele length
AssemblyAllele length
hg38329156
hg19329155
Variant TypeOTHER sequence alteration
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4333728
Supporting Variants
Samples
Known GenesMIR7853, NCKAP5
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Commentscomplex variant
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15789626
Frequency
Sample Size10847
Observed Gain0
Observed Loss0
Observed Complex0
Frequency0.000046


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