A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15789156



Internal ID19514519
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:29022565..29214573hg38UCSC Ensembl
chr1:29349077..29541085hg19UCSC Ensembl
Cytoband1p35.3
Allele length
AssemblyAllele length
hg38192009
hg19192009
Variant TypeOTHER sequence alteration
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4562992
Supporting Variants
Samples
Known GenesEPB41, MECR, SRSF4, TMEM200B
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Commentscomplex variant
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15789156
Frequency
Sample Size10847
Observed Gain0
Observed Loss0
Observed Complex0
Frequency0.008312


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