A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15788976



Internal ID19514338
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:159807892..159974165hg38UCSC Ensembl
chr1:159777682..159943955hg19UCSC Ensembl
Cytoband1q23.2
Allele length
AssemblyAllele length
hg38166274
hg19166274
Variant TypeOTHER sequence alteration
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4316456
Supporting Variants
Samples
Known GenesC1orf204, CCDC19, FCRL6, IGSF9, LINC01133, SLAMF8, SLAMF9, TAGLN2, VSIG8
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Commentscomplex variant
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15788976
Frequency
Sample Size10847
Observed Gain0
Observed Loss0
Observed Complex0
Frequency0.000599


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