A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15788938



Internal ID19860986
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:115165839..115167757hg38UCSC Ensembl
chr1:115708460..115710378hg19UCSC Ensembl
Cytoband1p13.2
Allele length
AssemblyAllele length
hg381919
hg191919
Variant TypeOTHER sequence alteration
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4559709
Supporting Variants
Samples
Known Genes
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Commentscomplex variant
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15788938
Frequency
Sample Size10847
Observed Gain0
Observed Loss0
Observed Complex0
Frequency0.000553


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer