A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15788802



Internal ID19860848
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr19:45568433..45576484hg38UCSC Ensembl
chr19:46071691..46079742hg19UCSC Ensembl
Cytoband19q13.32
Allele length
AssemblyAllele length
hg388052
hg198052
Variant TypeOTHER sequence alteration
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4343502
Supporting Variants
Samples
Known GenesOPA3
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Commentscomplex variant
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15788802
Frequency
Sample Size10847
Observed Gain0
Observed Loss0
Observed Complex0
Frequency0.000046


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